MINLI XU
minlix =AT= andrew.cmu.edu
mix5 =AT= pitt.edu

Fall2009 PhD Student in
Joint CMU-Pitt Computational Biology Program

3076.1 Biological Science Tower 3 (BST 3)
3501 Fifth Ave
Pittsburgh, PA 15260
Tel: 412 383 7256


== Welcome to my webpage at Pittsburgh ==

- I am currently a first year student in Joint CMU-Pitt Phd Program in Computational Biology.
- I comes from Shanghai, China, where I was born and had my pre-college education. I obtained my B.Sc degree from the Chinese University of Hong Kong with major in Molecular Biotechnology and minors in Computer Science and Mathematics. During the undergraduate study, I developed a strong interest towards the inter-disciplinary study of computational life sciences. I'm also deeply interested in theoretical computer science and artificial intelligence.
- Before transfered to Pittsburgh, I studied at UNC-Charlotte as a PhD student in Information Technology (Bioinformatics Track)
- My current research focus is: how to finish the Machine Learning homeworks on time.


==Publications==

Minli Xu and Zhengchang Su, A novel metric for comparing TFBS motif profiles, submitted to PLoS ONE (In revision)

Ka Hou Chu, Minli Xu, Chi Pang Li (2009) Rapid DNA barcoding analysis of large datasets using the composition vector method , BMC Bioinformatics, 2009, 10(Suppl 14):S8 [ link ]

Shaoqiang Zhang, Minli Xu, Shan Li, Zhengchang Su (2009) de novo Genome-wide Prediction of cis-regulatory Binding Sites in Prokaryotes, Nucleic Acids Research, 2009, 37(10),e72 [ link ]

Minli Xu, Zhengchang Su (2009) Computational prediction of cAMP receptor protein (CRP) binding sites in cyanobacterial genomes, BMC Genomics, 2009, 10, 23 [ link ]

James M. Mottonen, Minli Xu, Donald J. Jacobs, Dennis R. Livesay (2009) Unifying mechanical and thermodynamic descriptions across the thioredoxin protein family, PROTEINS: Structure, Function, and Bioinformatics.75:610-627 [ link ]

[Poster] Ka Hou Chu, Minli Xu, Chi Pang Li (2007) Rapid tree construction for DNA barcoding using a simple correlation analysis without sequence alignment, Second International Barcode of Life Conference, Taipei,Taiwan,September,2007


== My Photo Albums ==

Click here to view photoes.


== some of my favorite links ==

wikipedia.org      imdb.com      gamespot.com      hulu.com
www.emporis.com
The World's Best Skylines
Docarzt & Friends . A LOST fansite
Biomedical Sciences Blog
Shanghai @ Flickr