school of computer science

computational biology

Cellorganizer v2.6.0

Release Highlights

  • SBML Spatial 3 Level 1 draft 0.90 support. Included a new synthesis output option named 'SBMLSpatial' that saves a synthetic image as an SBML instance.
  • OME-TIFF support. Included a new synthesis output options named 'OMETIFF' that saves a synthetic image as an OME-TIFF Bioformats.
  • T cell models. Included a new model class/type called standardized_voxels/standardized-map half-ellipsoid which is used to model the protein distribution of T cell movies, given annotations of the synapse.

Downloads

Requirements

  • Matlab 2015b or newer
  • Image Processing Toolbox for Matlab
  • Statistics and Machine Learning Toolbox/Statistics Toolbox
  • SymBiology Toolbox
  • Curve Fitting Toolbox

Compatibility

CellOrganizer releases for the 2.0 family have been tested on

  • Matlab 2015a/Ubuntu 12.04
  • Matlab 2014a/Ubuntu 12.04
  • Matlab 2016a/MacOSX El Capitan